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Robust nuclei segmentation with encoder‐decoder network from the histopathological images
Department of Computer Science and Engineering MANIT Bhopal India.ORCID iD: 0000-0003-0523-8774
Department of Computer Science and Engineering MANIT Bhopal India.
University of Gävle, Faculty of Engineering and Sustainable Development, Department of Electrical Engineering, Mathematics and Science, Electronics.ORCID iD: 0000-0003-0934-7230
2024 (English)In: International journal of imaging systems and technology (Print), ISSN 0899-9457, E-ISSN 1098-1098, Vol. 34, no 4, article id e23111Article in journal (Refereed) Published
Abstract [en]

uclei segmentation is a prerequisite and an essential step in cancer detection and prognosis. Automatic nuclei segmentation from the histopathological images is challenging due to nuclear overlap, disease types, chromatic stain variability, and cytoplasmic morphology differences. Furthermore, it is demanding to develop a single accurate method for segmenting nuclei of different organs because of the diversity in nuclei size, shape, and appearance across the various organs. To address these challenges, we developed a robust Encoder-Decoder network for nuclei segmentation from the multi-organ histopathological images. In this approach, we utilize a pre-trained EfficientNet-B4 as an Encoder subnetwork and design a new Decoder subnetwork architecture. Additionally, we have applied morphological operation-based post-processing to improve the segmentation results. The performance of our approach has been evaluated on three public datasets, namely, Kumar, TNBC, and CPM-17 datasets, which contain histopathological images of seven organs, one organ, and four organs, respectively. The proposed method achieved an aggregated Jacquard index of 0.636, 0.611, and 0.706 on Kumar, TNBC, and CPM-17 datasets, respectively. Our proposed approach also shows superiority over the existing methods. 

Place, publisher, year, edition, pages
Wiley , 2024. Vol. 34, no 4, article id e23111
Keywords [en]
encoder-decoder network; multi-organ histopathological images; nuclei segmentation; post-processing; pre-trained EfficientNet
National Category
Medical Engineering
Identifiers
URN: urn:nbn:se:hig:diva-44488DOI: 10.1002/ima.23111ISI: 001235111000001Scopus ID: 2-s2.0-85194821023OAI: oai:DiVA.org:hig-44488DiVA, id: diva2:1867038
Available from: 2024-06-10 Created: 2024-06-10 Last updated: 2025-01-20Bibliographically approved

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Telagam Setti, Sunilkumar

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CiteExportLink to record
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